Someone chided us earlier for continuieng to post help for your alcohol woes. I will assume since you posted the above comment that you have not totally given up on the alcohol. The alcohol will do the job if you have the time to mess with it. If not, another stove might be your best bet for now. I see you are leaving soon for your finish of the AT. Go for the mountain and Good Luck. I hope to accomplish what you have some day.
Now for something that I have conquered, the alky stove. The stove you are using must fit the pot you are using to be efficient. I personally don't like the stoves where the pot sits directly on the stove. Anything that coveres the botton heating area of the pot cuts down on efficiency. Another thing to think about is where the pot is in relation to the flame. The part of a flame that has the most heating potential is near the top of the flame, not at its base. I'm talking here about a pressurized stove not a wick stove. A wick stove has slightly different flame caracteristics.
A wick stove is easy to light but does not mix the air and fuel as efficiently at the pressurized stove. Anyway that gives you some fuel to think about on your hike to Katahdin.