By dumb luck I stumbled across the latest publicly available .kml for the CDT over at the CDTC web site. It's the 2012 version from USFS/Bearcreeksurvey, so it's only a little behind the most current.

All of Bearcreeksurvey way points have been updated as well. Just select 'Waypoint' from the 'Location Type' drop list. The mileage waypoints were not added as they just clutter up the place.

The updated map can be found here:
http://postholer.com/gmap/gmap.php?trail_id=2

-postholer